Archive for the ‘Information Resources’ Category

Exiqon subsidiary Oncotech goes out of business — irresponsibly

Saturday, June 12th, 2010

Oncotech is — or was — an American laboratory providing individualized tumor response testing (ITRT) as a service to patients and physicians since the mid-1980s.  It was co-founded by Robert Nagourney and I. We each left the company in the early 1990s, over disagreements with the controlling investors (4 venture capital companies) over the management and directions of the company.  I remained supportive of the company, over the years, and played an important role in securing and, later, retaining reimbursement by Medicare for their services.  Robert and I each started our own small private laboratories to offer related cell culture testing services.

Oncotech continued operations as a privately-held, venture-capital controlled company until February of 2008, when it was acquired (purchased) by a Danish biotechnology company called Exiqon, Inc. for $45 million (US) in Exiqon securities.

Exiqon replaced the Oncotech CEO and installed its own management team, continuing to operate Oncotech as a wholly-owned subsidiary, with a business model centered around providing ITRT on a (US) national basis — importantly to Medicare patients.

In the case of my own laboratory, we opted out of Medicare, effective July 1. 2008, because the reimbursements received from Medicare did not cover our costs of providing our services.

Exiqon Oncotech, however, depended on Medicare reimbursement to support its business model.  In the USA, Medicare coverage decisions for many types of medical services are made at the regional level, by the private insurance companies with which Medicare contracts to administer services to Medicare beneficiaries (most prominently, patients 65 years of age and older). Previous Medicare contractors for California made the determination that ITRT qualified as a Medicare covered service.  These included the TransAmerica and National Heritage Insurance companies. Most recently, an insurance company called Palmetto was awarded the contract to administer Medicare services for California.  Palmetto made the decision to discontinue Medicare payment for ITRT in California.

Last week, Exiqon Oncotech announced that it was discontinuing operations, because of the withdrawal of Medicare reimbursement for its services.  This was an entirely understandable, if regrettable, decision.  What was in no way understandable — or defendable, for that matter — was the way that they ceased operations.

Exiqon Oncotech sent out notifications to its client physicians that it was ceasing operations, virtually immediately.  On a single day this past week, they received two dozen specimens from human tumor biopsies via FedEx and other couriers.  All of these specimens were simply sent back to the hospitals and clinics which sent the specimens. Physicians were told that there were no other laboratories who could perform the tests requested.

While it is true that no other American laboratories have chosen to utilize Exiqon Oncotech’s non-proprietary technology for ITRT, it was well known to Exiqon Oncotech that there are a number of highly experienced, well qualified, well-published American laboratories which provide this service, utilizing different, but at least comparably valid, technologies.

In my long experience in this field, I well remember two previous, investor-backed, clinical laboratory companies which provided ITRT as a service to patients, only to make the decision that their business models were no longer viable. These companies were (1) Analytical Biosystems and (2) NuOncology Laboratories. When these latter companies ceased operations they (a) did so in an orderly fashion, giving their clients adequate advance warning and winding down operations at a pace which enabled them to provide testing for those patients and physicians who had already planned and depended upon receiving these services, and (b) these companies were open and helpful in providing their former client physicians with contact information for other laboratories within the US which continued to provide ITRT services.

In the case of Exiqon Oncotech’s two dozen tumor specimens simply marked “return to sender,” I can scarcely imagine anything more irresponsible. In many of those cases, doubtless the physicians and/or surgeons discussed in advance with their patients the importance of sending their biopsies for ITRT. In some cases, the surgical procedure may have been performed primarily for the purpose of ITRT. In other cases, the patients were doubtless comforted by knowing that this testing was to be performed.

Business is business, but, at a certain point, business is also about people, and cancer business is, or should be, about cancer patients.

I am saddened by the shuttering of Oncotech’s doors, 25 years after its founding, and I am ashamed at the way in which those doors were apparently shuttered.

It should be noted that the Medicare contractor for the state of Pennsylvania continues to provide coverage for ITRT and that there is an experienced laboratory in Pennsylvania (Precision Therapeutics) which both provides ITRT and accepts Medicare reimbursement as payment in full.  California laboratories continuing to provide ITRT (without Medicare reimbursement, possibly requiring patient payment for services) include Rational Therapeutics, Anticancer, Inc., and my own laboratory.

- Larry Weisenthal 12-June-2010

Follow-up: an earlier blogpost by an Exiqon Oncotech employee provides independent confirmation of the above.

Cell death assays for lymphatic neoplasms

Wednesday, February 10th, 2010

I participate in an international discussion group relating to individualized tumor response testing (ITRT), otherwise known as cell culture drug response testing (CCDRT).  Most recently, the topic of ITRT/CCDRT in non-Hodgkin’s lymphoma (NHL) was raised.  One European group utilizes the ATP endpoint.  Another European group utilizes a modification of the DISC endpoint (dye exclusion by living cells, in a system capable of selectively identifying the living cells as being either neoplastic or normal).  Both ATP and DISC endpoints are based on cell kill/cell death (as opposed to cell proliferation/DNA synthesis, which is the other major ITRT/CCDRT endpoint). The DISC endpoint is capable of discriminating between drug effects of neoplastic versus normal cells, present in the same cell culture, while the ATP is not selective for neoplastic cells versus normal cells.

Generally speaking, the results of cell death endpoints agree with each other pretty well, as long as the cell population being measured is predominately the  cell population of interest (in this case, tumor or neoplastic cells). This should not be surprising — after all, a dead cell is a dead cell.  The problem comes when there are appreciable numbers of “contaminating” normal/non-neoplastic cells present.  In these cases, endpoints which are not specific for tumor cells may produce skewed results.

The table below shows solid tumor correlation coefficients, comparing DISC (“specific for tumor cells”) and MTT (not “specific for tumor cells”) endpoints.  These data come from studies in which individual tumors were simultaneously tested in each endpoint, after being cultured in precisely the same conditions, for precisely the same period of time. It can be seen that, in the case of the drug melphalan, when there are greater than 40% tumor cells with solid tumors, the results of DISC and MTT endpoints agree quite well. There were relatively few cases in which specimens with fewer than 40% tumor cells were tested with the non-tumor-selective (MTT) endpoint (because of advance knowledge that, in such specimens, the MTT endpoint was not reliably discriminatory for tumor cells).  In the few such cases tested, the MTT/DISC correlations were not very good (r=0.51, r2=0.26).

Comparison between MTT and DISC results for melphalan in solid tumors as a function of percentage of total viable cells which were tumor/neoplastic cells postculture:

MTT DISC table melphalan 12.5 solid tumorsTIn contrast, in the case of melphalan in non-Hodgkin’s lymphoma/chronic lymphocytic leukemia, there was progressively serious skewing of MTT results by normal cells, as the post-culture percentage of neoplastic cells dropped below 95%:

MTT DISC table melphalan 2 nhl cllThe following two scattergrams show similar data graphically (but with solid tumor data limited to ovarian cancer, to simplify the comparisons):

MELPHOVAMELPHcllnhlThese artifactual results with the metabolic endpoint can seriously comprise the biological validity of the assay results, as shown in the following two graphs.

These data analyses are based on the principle that chemonaive tumors (i.e. from previously-untreated patients) are well known to be more drug sensitive/less drug resistant than are non-chemonaive tumors (i.e. from previously-treated patients):

ovarian_melph_prerx_noRx_disc_mttIn the above graph, from the ovarian cancer dataset, it can be seen that, in BOTH DISC and MTT endpoints, specimens from previously-treated patients were significantly more resistant to melphalan than were specimens from chemonaive/previously-untreated patients.

However, there were far different results with the NHL/CLL dataset:

cllnhl_melph_prerx_noRx_disc_mttIn the case of CLL/NHL, where the effect of normal cells skewing the results of the non-tumor-cell-discriminatory MTT endpoint is much greater, the greater chemosensitivity for specimens from untreated patients was confirmed with the (selective) DISC endpoint, but was not observed with the (non-selective) MTT endpoint.

The problem in NHL/CLL is that the metabolic activity of the neoplastic cells (on a per cell basis) can be low, relative to the metabolic activity of normal cells (e.g. macrophages, cell culture transformed normal T-lymphocytes, etc.).  Thus, the normal cells typically present in specimens from lymphatic neoplasms may skew/disort the cell death estimates to a much greater extent than in the case of the typical solid tumors. Thus, results of non-discriminatory endpoints (e.g. MTT, ATP) must be interpreted with caution, in the case of lymphatic neoplasms.

We have similar data in the case of acute non-lymphocytic leukemia (skewing of results by normal cells with non-selective endpoints).  We do not have sufficient numbers of datapoints in the case of acute lymphoblastic leukemia to make these comparisons.

It is obvious that non-selective endpoints will have very little utility in neoplasms such as Hodgkin’s Disease and multiple myeloma, where most specimens have very large numbers of “contaminating” normal cells.

Lecture on issues related to cell culture testing

Friday, November 13th, 2009

33 minute lecture on functional profiling of human cancer, using cell culture drug resistance testing on fresh human tumor specimens obtained by surgical biopsy. This lecture was given at Charite University Medical Center in Berlin, Germany on March 19, 2009 by Larry Weisenthal, MD PhD. The audience consisted primarily of oncologists and surgeons working in the field of gynecologic oncology. Thanks to Dr. Frank Kischkel, TherapySelect GmbH & Co. KG, Heidelberg, Germany

http://vimeo.com/7577309

Fresh human tumor cell culture atlas

Monday, October 12th, 2009

My colleagues and I are working on an updated format for the Human Tumor Assay Journal, which now contains an atlas of fresh human tumors in short term suspension culture (click on Fresh Human Tumor Cell Culture Atlas illustrating examples of (1) the appearance of the fresh tumors immediately following scissor mincing and digestion with collagenase/DNAse, (2) appearance of “control” (cultured without drugs) tumor cells, following 96 hours of suspension culture, in anchorage-independent conditions, (3) appearance of cells when cultured with an “effective”/”active” drug, and (4) appearance of cells when cultured with an “ineffective”/”inactive” drug.

The atlas is a work in progress, but it now has sufficient numbers of examples of different classes of tumors that I hope it will be useful to workers in this field.

Comments and suggestions are welcome.

- Larry Weisenthal/Huntington Beach, CA mail@weisenthal.org